PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021862.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 119aa    MW: 13015.9 Da    PI: 8.5226
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021862.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC112.13e-35221021998
        NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ + + krrtl+k d+a+avt tdifdflv+ v +
  CCG021862.1  22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTHRSWMITIQGKRRTLHKEDVASAVTATDIFDFLVNLVSH 102
                  99**********825689**********************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.49E-271896IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-311888IPR009072Histone-fold
PfamPF008082.2E-212387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MRQAGTYSGI LSGGLSGKTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIE  60
ELTHRSWMIT IQGKRRTLHK EDVASAVTAT DIFDFLVNLV SHSSDSTDIN HVEIETTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-272210040117HapE
4g92_C4e-272210040117HapE
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022730.12e-83PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL31e-33NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLB9GWG19e-76B9GWG1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09100.11e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-35nuclear factor Y, subunit C3